IL_7ABZ_080

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

AA*UACU

Length

6 nucleotides

Bulged bases

7ABZ|1|1|A|2439

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_080 not in the Motif Atlas

Homologous match to IL_4WF9_081

Geometric discrepancy: 0.2475

The information below is about IL_4WF9_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.2

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

62

Unit IDs

7ABZ|1|1|A|2070
7ABZ|1|1|A|2071
*
7ABZ|1|1|U|2438
7ABZ|1|1|A|2439
7ABZ|1|1|C|2440
7ABZ|1|1|U|2441

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2