IL_7ABZ_122

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

7ABZ|1|2|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_122 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.3372

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

7ABZ|1|2|G|147
7ABZ|1|2|G|148
7ABZ|1|2|A|149
7ABZ|1|2|U|150
7ABZ|1|2|A|151
7ABZ|1|2|A|152
7ABZ|1|2|C|153
*
7ABZ|1|2|G|168
7ABZ|1|2|C|169
7ABZ|1|2|U|170
7ABZ|1|2|A|171
7ABZ|1|2|A|172
7ABZ|1|2|U|173
7ABZ|1|2|A|174
7ABZ|1|2|C|175

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain y

30S ribosomal protein S20