IL_7ABZ_133

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_133 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.2568

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

7ABZ|1|2|G|450
7ABZ|1|2|A|451
7ABZ|1|2|A|452
7ABZ|1|2|G|453
7ABZ|1|2|G|454
7ABZ|1|2|G|455
*
7ABZ|1|2|C|477
7ABZ|1|2|A|478
7ABZ|1|2|U|479
7ABZ|1|2|U|480
7ABZ|1|2|G|481
7ABZ|1|2|A|482
7ABZ|1|2|C|483

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16