IL_7ABZ_157

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

7ABZ|1|2|U|1049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_157 not in the Motif Atlas

Geometric match to IL_3MEI_001

Geometric discrepancy: 0.149

The information below is about IL_3MEI_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

7ABZ|1|2|G|1048
7ABZ|1|2|U|1049
7ABZ|1|2|G|1050
*
7ABZ|1|2|C|1208
7ABZ|1|2|C|1209

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

SsrA-binding protein

Chain s

30S ribosomal protein S14