IL_7ABZ_186

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

CGCU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_186 not in the Motif Atlas

Geometric match to IL_4V88_438

Geometric discrepancy: 0.2947

The information below is about IL_4V88_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

7ABZ|1|4|C|107
7ABZ|1|4|G|108
7ABZ|1|4|C|109
7ABZ|1|4|U|110
*
7ABZ|1|4|A|133
7ABZ|1|4|G|134
7ABZ|1|4|A|135
7ABZ|1|4|G|136

Current chains

Chain 4

transfer-messenger RNA (tmRNA)

Nearby chains

Chain h

30S ribosomal protein S3