IL_7ABZ_197

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_197 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.206

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

7ABZ|1|1|U|1851
7ABZ|1|1|U|1852
7ABZ|1|1|A|1853
7ABZ|1|1|A|1854
7ABZ|1|1|U|1855
7ABZ|1|1|U|1856
7ABZ|1|1|G|1857
7ABZ|1|1|A|1858
7ABZ|1|1|U|1859
7ABZ|1|1|G|1860
*
7ABZ|1|1|U|1882
7ABZ|1|1|U|1883
7ABZ|1|1|G|1884
7ABZ|1|1|A|1885
7ABZ|1|1|U|1886
7ABZ|1|1|C|1887
7ABZ|1|1|G|1888
7ABZ|1|1|A|1889
7ABZ|1|1|A|1890
7ABZ|1|1|G|1891

Current chains

Chain 1

23S ribosomal RNA

Nearby chains