IL_7ABZ_216

3D structure

PDB id

7ABZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.21 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ABZ_216 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1304

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

7ABZ|1|2|G|887
7ABZ|1|2|G|888
7ABZ|1|2|A|889
7ABZ|1|2|G|890
7ABZ|1|2|U|891
7ABZ|1|2|A|892
7ABZ|1|2|C|893
7ABZ|1|2|G|894
*
7ABZ|1|2|U|905
7ABZ|1|2|A|906
7ABZ|1|2|A|907
7ABZ|1|2|A|908
7ABZ|1|2|A|909
7ABZ|1|2|C|910

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain q

30S ribosomal protein S12