IL_7ACJ_017

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7ACJ|1|1|G|801, 7ACJ|1|1|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACJ_017 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.1338

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7ACJ|1|1|G|674
7ACJ|1|1|A|675
7ACJ|1|1|A|676
7ACJ|1|1|A|677
7ACJ|1|1|C|678
*
7ACJ|1|1|G|799
7ACJ|1|1|A|800
7ACJ|1|1|G|801
7ACJ|1|1|A|802
7ACJ|1|1|U|803
7ACJ|1|1|A|804
7ACJ|1|1|G|805
7ACJ|1|1|C|806

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L4

Chain L

50S ribosomal protein L15