3D structure

PDB id
7ACJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of translocated trans-translation complex on E. coli stalled ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GAAG*CCUGC
Length
9 nucleotides
Bulged bases
7ACJ|1|1|U|1559
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ACJ_052 not in the Motif Atlas
Homologous match to IL_5J7L_296
Geometric discrepancy: 0.1948
The information below is about IL_5J7L_296
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_58112.2
Basepair signature
cWW-cWW-L-R-cWW
Number of instances in this motif group
4

Unit IDs

7ACJ|1|1|G|1432
7ACJ|1|1|A|1433
7ACJ|1|1|A|1434
7ACJ|1|1|G|1435
*
7ACJ|1|1|C|1557
7ACJ|1|1|C|1558
7ACJ|1|1|U|1559
7ACJ|1|1|G|1560
7ACJ|1|1|C|1561

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain B
50S ribosomal protein L2

Coloring options:


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