3D structure

PDB id
7ACJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of translocated trans-translation complex on E. coli stalled ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
7ACJ|1|1|A|1801, 7ACJ|1|1|C|1816, 7ACJ|1|1|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ACJ_069 not in the Motif Atlas
Homologous match to IL_7A0S_065
Geometric discrepancy: 0.1204
The information below is about IL_7A0S_065
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.5
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

7ACJ|1|1|U|1798
7ACJ|1|1|G|1799
7ACJ|1|1|C|1800
7ACJ|1|1|A|1801
7ACJ|1|1|A|1802
7ACJ|1|1|A|1803
7ACJ|1|1|C|1804
*
7ACJ|1|1|G|1813
7ACJ|1|1|G|1814
7ACJ|1|1|A|1815
7ACJ|1|1|C|1816
7ACJ|1|1|G|1817
7ACJ|1|1|U|1818
7ACJ|1|1|A|1819
7ACJ|1|1|U|1820
7ACJ|1|1|A|1821

Current chains

Chain 1
23S ribosomal RNA

Nearby chains

Chain 2
Small subunit ribosomal RNA; SSU rRNA
Chain B
50S ribosomal protein L2

Coloring options:


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