IL_7ACJ_069

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

7ACJ|1|1|A|1801, 7ACJ|1|1|C|1816, 7ACJ|1|1|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACJ_069 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1204

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7ACJ|1|1|U|1798
7ACJ|1|1|G|1799
7ACJ|1|1|C|1800
7ACJ|1|1|A|1801
7ACJ|1|1|A|1802
7ACJ|1|1|A|1803
7ACJ|1|1|C|1804
*
7ACJ|1|1|G|1813
7ACJ|1|1|G|1814
7ACJ|1|1|A|1815
7ACJ|1|1|C|1816
7ACJ|1|1|G|1817
7ACJ|1|1|U|1818
7ACJ|1|1|A|1819
7ACJ|1|1|U|1820
7ACJ|1|1|A|1821

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain B

50S ribosomal protein L2