IL_7ACJ_099

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACJ_099 not in the Motif Atlas

Geometric match to IL_7A0S_094

Geometric discrepancy: 0.1992

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7ACJ|1|1|C|2652
7ACJ|1|1|U|2653
7ACJ|1|1|A|2654
7ACJ|1|1|G|2655
7ACJ|1|1|U|2656
7ACJ|1|1|A|2657
7ACJ|1|1|C|2658
*
7ACJ|1|1|G|2663
7ACJ|1|1|G|2664
7ACJ|1|1|A|2665
7ACJ|1|1|C|2666
7ACJ|1|1|C|2667
7ACJ|1|1|G|2668

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L6