IL_7ACJ_164

3D structure

PDB id

7ACJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of translocated trans-translation complex on E. coli stalled ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

G(4OC)CC*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ACJ_164 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.2078

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7ACJ|1|2|G|1401
7ACJ|1|2|4OC|1402
7ACJ|1|2|C|1403
7ACJ|1|2|C|1404
*
7ACJ|1|2|G|1497
7ACJ|1|2|UR3|1498
7ACJ|1|2|A|1499
7ACJ|1|2|A|1500
7ACJ|1|2|C|1501

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain 4

Transfer-messenger RNA; tmRNA

Chain 5

SsrA-binding protein

Chain q

30S ribosomal protein S12