IL_7AFA_016

3D structure

PDB id

7AFA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state F (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.95 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

7AFA|1|1|A|1257, 7AFA|1|1|A|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFA_016 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.1393

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

7AFA|1|1|G|1255
7AFA|1|1|A|1256
7AFA|1|1|A|1257
7AFA|1|1|G|1258
*
7AFA|1|1|C|1277
7AFA|1|1|G|1278
7AFA|1|1|G|1279
7AFA|1|1|A|1280
7AFA|1|1|C|1281
7AFA|1|1|C|1282

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain C

30S ribosomal protein S3

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14