IL_7AFH_003

3D structure

PDB id

7AFH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state C (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.59 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFH_003 not in the Motif Atlas

Geometric match to IL_5J7L_043

Geometric discrepancy: 0.1864

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7AFH|1|1|G|993
7AFH|1|1|A|994
7AFH|1|1|C|995
7AFH|1|1|A|996
7AFH|1|1|U|997
*
7AFH|1|1|A|1044
7AFH|1|1|C|1045

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain N

30S ribosomal protein S14