IL_7AFK_003

3D structure

PDB id

7AFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFK_003 not in the Motif Atlas

Homologous match to IL_5J7L_043

Geometric discrepancy: 0.2251

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7AFK|1|1|G|993
7AFK|1|1|A|994
7AFK|1|1|C|995
7AFK|1|1|A|996
7AFK|1|1|U|997
*
7AFK|1|1|A|1044
7AFK|1|1|C|1045

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain N

30S ribosomal protein S14