IL_7AFK_016

3D structure

PDB id

7AFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.9 Å

Loop

Sequence

GCA*UUCCC

Length

8 nucleotides

Bulged bases

7AFK|1|1|C|934

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFK_016 not in the Motif Atlas

Homologous match to IL_5J7L_041

Geometric discrepancy: 0.2278

The information below is about IL_5J7L_041

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

7AFK|1|1|G|933
7AFK|1|1|C|934
7AFK|1|1|A|935
*
7AFK|1|1|U|1380
7AFK|1|1|U|1381
7AFK|1|1|C|1382
7AFK|1|1|C|1383
7AFK|1|1|C|1384

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain G

30S ribosomal protein S7

Chain I

30S ribosomal protein S9