IL_7AFL_049

3D structure

PDB id

7AFL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state D (multibody refinement for body domain of 30S ribosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

7AFL|1|A|A|702

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFL_049 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.3523

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

7AFL|1|A|U|684
7AFL|1|A|G|685
7AFL|1|A|U|686
7AFL|1|A|A|687
7AFL|1|A|G|688
*
7AFL|1|A|C|699
7AFL|1|A|G|700
7AFL|1|A|U|701
7AFL|1|A|A|702
7AFL|1|A|G|703
7AFL|1|A|A|704
7AFL|1|A|G|705
7AFL|1|A|A|706

Current chains

Chain A

16SrRNA

Nearby chains

Chain K

30S ribosomal protein S11