IL_7AFN_005

3D structure

PDB id

7AFN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 30S ribosomal subunit assembly complex state B (head domain)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.86 Å

Loop

Sequence

UUU*GAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AFN_005 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.1631

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

7AFN|1|1|U|1007
7AFN|1|1|U|1008
7AFN|1|1|U|1009
*
7AFN|1|1|G|1020
7AFN|1|1|A|1021
7AFN|1|1|A|1022

Current chains

Chain 1

16SrRNA (head domain of the 30S ribosome)

Nearby chains

Chain N

30S ribosomal protein S14