IL_7AJT_025
3D structure
- PDB id
- 7AJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 7AJT|1|D3|A|468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AJT_025 not in the Motif Atlas
- Geometric match to IL_4V88_386
- Geometric discrepancy: 0.2857
- The information below is about IL_4V88_386
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
7AJT|1|D3|U|37
7AJT|1|D3|C|38
7AJT|1|D3|A|39
7AJT|1|D3|A|40
7AJT|1|D3|A|41
*
7AJT|1|D3|U|466
7AJT|1|D3|G|467
7AJT|1|D3|A|468
7AJT|1|D3|C|469
7AJT|1|D3|A|470
7AJT|1|D3|A|471
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain CL
- Ribosome biogenesis protein BMS1
- Chain DJ
- 40S ribosomal protein S9-A
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