IL_7AJT_028
3D structure
- PDB id
- 7AJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.6 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 7AJT|1|D3|U|66, 7AJT|1|D3|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AJT_028 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.2345
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
7AJT|1|D3|U|64
7AJT|1|D3|A|65
7AJT|1|D3|U|66
7AJT|1|D3|A|67
7AJT|1|D3|A|68
7AJT|1|D3|G|69
*
7AJT|1|D3|U|82
7AJT|1|D3|G|83
7AJT|1|D3|A|84
7AJT|1|D3|A|85
7AJT|1|D3|A|86
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DG
- 40S ribosomal protein S6-A
- Chain DY
- 40S ribosomal protein S24-A
- Chain UT
- U3 small nucleolar RNA-associated protein 20
Coloring options: