IL_7AJT_034

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CGAC*GAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_034 not in the Motif Atlas

Homologous match to IL_4V88_396

Geometric discrepancy: 0.3958

The information below is about IL_4V88_396

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

7AJT|1|D3|C|186
7AJT|1|D3|G|187
7AJT|1|D3|A|188
7AJT|1|D3|C|189
*
7AJT|1|D3|G|196
7AJT|1|D3|A|197
7AJT|1|D3|A|198
7AJT|1|D3|G|199

Current chains

Chain D3

18S rRNA

Nearby chains

Chain UT

U3 small nucleolar RNA-associated protein 20