IL_7AJT_058

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUAUU*AAGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_058 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3756

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

7AJT|1|D3|G|885
7AJT|1|D3|U|886
7AJT|1|D3|A|887
7AJT|1|D3|U|888
7AJT|1|D3|U|889
*
7AJT|1|D3|A|923
7AJT|1|D3|A|924
7AJT|1|D3|G|925
7AJT|1|D3|A|926
7AJT|1|D3|C|927

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DO

40S ribosomal protein S14-A

Chain JO

KRR1 small subunit processome component