IL_7AJT_066

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_066 not in the Motif Atlas

Geometric match to IL_5Z1I_001

Geometric discrepancy: 0.3362

The information below is about IL_5Z1I_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7AJT|1|D3|G|1213
7AJT|1|D3|U|1214
7AJT|1|D3|C|1215
*
7AJT|1|D3|G|1448
7AJT|1|D3|U|1449
7AJT|1|D3|U|1450

Current chains

Chain D3

18S rRNA

Nearby chains

Chain JF

Ribosomal RNA small subunit methyltransferase NEP1

Chain JH

Essential nuclear protein 1