IL_7AJT_077

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_077 not in the Motif Atlas

Geometric match to IL_280D_001

Geometric discrepancy: 0.1988

The information below is about IL_280D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7AJT|1|D3|C|1675
7AJT|1|D3|U|1676
7AJT|1|D3|C|1677
7AJT|1|D3|A|1678
*
7AJT|1|D3|U|1723
7AJT|1|D3|U|1724
7AJT|1|D3|U|1725
7AJT|1|D3|G|1726

Current chains

Chain D3

18S rRNA

Nearby chains