IL_7AJT_098

3D structure

PDB id

7AJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Pre-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.6 Å

Loop

Sequence

UGGU*ACG

Length

7 nucleotides

Bulged bases

7AJT|1|D3|G|1118

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJT_098 not in the Motif Atlas

Geometric match to IL_8C3A_468

Geometric discrepancy: 0.3856

The information below is about IL_8C3A_468

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

7AJT|1|D3|U|1117
7AJT|1|D3|G|1118
7AJT|1|D3|G|1119
7AJT|1|D3|U|1120
*
7AJT|1|D4|A|5
7AJT|1|D4|C|6
7AJT|1|D4|G|7

Current chains

Chain D3

18S rRNA

Chain D4

U3 snoRNA

Nearby chains

Chain UB

Nucleolar complex protein 14