IL_7AJU_016
3D structure
- PDB id
- 7AJU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUA*UUUUC
- Length
- 8 nucleotides
- Bulged bases
- 7AJU|1|D3|U|260
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7AJU_016 not in the Motif Atlas
- Geometric match to IL_5B2P_002
- Geometric discrepancy: 0.2251
- The information below is about IL_5B2P_002
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_07785.1
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 33
Unit IDs
7AJU|1|D3|G|204
7AJU|1|D3|U|205
7AJU|1|D3|A|206
*
7AJU|1|D3|U|259
7AJU|1|D3|U|260
7AJU|1|D3|U|261
7AJU|1|D3|U|262
7AJU|1|D3|C|263
Current chains
- Chain D3
- 18S rRNA
Nearby chains
- Chain DE
- 40S ribosomal protein S4-A
- Chain DG
- 40S ribosomal protein S6-A
- Chain DI
- 40S ribosomal protein S8-A
- Chain UT
- U3 small nucleolar RNA-associated protein 20
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