3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GUA*UUUUC
Length
8 nucleotides
Bulged bases
7AJU|1|D3|U|260
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AJU_016 not in the Motif Atlas
Geometric match to IL_5B2P_002
Geometric discrepancy: 0.2251
The information below is about IL_5B2P_002
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_07785.1
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
33

Unit IDs

7AJU|1|D3|G|204
7AJU|1|D3|U|205
7AJU|1|D3|A|206
*
7AJU|1|D3|U|259
7AJU|1|D3|U|260
7AJU|1|D3|U|261
7AJU|1|D3|U|262
7AJU|1|D3|C|263

Current chains

Chain D3
18S rRNA

Nearby chains

Chain DE
40S ribosomal protein S4-A
Chain DG
40S ribosomal protein S6-A
Chain DI
40S ribosomal protein S8-A
Chain UT
U3 small nucleolar RNA-associated protein 20

Coloring options:


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