IL_7AJU_040

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJU_040 not in the Motif Atlas

Geometric match to IL_4K27_002

Geometric discrepancy: 0.3087

The information below is about IL_4K27_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

7AJU|1|D3|C|709
7AJU|1|D3|U|710
7AJU|1|D3|U|711
7AJU|1|D3|G|712
*
7AJU|1|D3|C|726
7AJU|1|D3|U|727
7AJU|1|D3|U|728
7AJU|1|D3|G|729

Current chains

Chain D3

18S rRNA

Nearby chains

Chain CN

Ribosomal RNA-processing protein 7