3D structure

PDB id
7AJU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGA*UCUUUGG
Length
10 nucleotides
Bulged bases
7AJU|1|D3|C|1096, 7AJU|1|D3|U|1097, 7AJU|1|D3|G|1100
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AJU_052 not in the Motif Atlas
Homologous match to IL_4V88_437
Geometric discrepancy: 0.5051
The information below is about IL_4V88_437
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_62898.1
Basepair signature
cWW-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

7AJU|1|D3|C|1034
7AJU|1|D3|G|1035
7AJU|1|D3|A|1036
*
7AJU|1|D3|U|1095
7AJU|1|D3|C|1096
7AJU|1|D3|U|1097
7AJU|1|D3|U|1098
7AJU|1|D3|U|1099
7AJU|1|D3|G|1100
7AJU|1|D3|G|1101

Current chains

Chain D3
18S rRNA

Nearby chains

Chain DL
40S ribosomal protein S11-A
Chain DN
40S ribosomal protein S13
Chain DW
40S ribosomal protein S22-A
Chain DX
40S ribosomal protein S23-A
Chain UX
rRNA-processing protein FCF1

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2702 s