IL_7AJU_085

3D structure

PDB id

7AJU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S-exosome super-complex (state Post-A1-exosome)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAUU*AAGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AJU_085 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2072

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

7AJU|1|D3|G|885
7AJU|1|D3|U|886
7AJU|1|D3|A|887
7AJU|1|D3|U|888
7AJU|1|D3|U|889
*
7AJU|1|D3|A|923
7AJU|1|D3|A|924
7AJU|1|D3|G|925
7AJU|1|D3|A|926
7AJU|1|D3|C|927

Current chains

Chain D3

18S rRNA

Nearby chains

Chain DA

40S ribosomal protein S1-A

Chain DO

40S ribosomal protein S14-A