IL_7AQD_020

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

7AQD|1|A|G|848, 7AQD|1|A|G|852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_020 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0908

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

7AQD|1|A|G|721
7AQD|1|A|A|722
7AQD|1|A|A|723
7AQD|1|A|A|724
7AQD|1|A|C|725
*
7AQD|1|A|G|846
7AQD|1|A|A|847
7AQD|1|A|G|848
7AQD|1|A|A|849
7AQD|1|A|U|850
7AQD|1|A|A|851
7AQD|1|A|G|852
7AQD|1|A|C|853

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15