IL_7AQD_025

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

7AQD|1|A|G|823, 7AQD|1|A|A|835, 7AQD|1|A|A|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_025 not in the Motif Atlas

Geometric match to IL_5J7L_265

Geometric discrepancy: 0.0911

The information below is about IL_5J7L_265

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

7AQD|1|A|G|822
7AQD|1|A|G|823
7AQD|1|A|G|824
*
7AQD|1|A|C|834
7AQD|1|A|A|835
7AQD|1|A|A|836
7AQD|1|A|U|837
7AQD|1|A|C|838

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain S

50S ribosomal protein L22

Chain d

50S ribosomal protein L34