IL_7AQD_033

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGC*GUUAC

Length

9 nucleotides

Bulged bases

7AQD|1|A|A|943

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_033 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.3267

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.3

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

38

Unit IDs

7AQD|1|A|G|927
7AQD|1|A|G|928
7AQD|1|A|G|929
7AQD|1|A|C|930
*
7AQD|1|A|G|940
7AQD|1|A|U|941
7AQD|1|A|U|942
7AQD|1|A|A|943
7AQD|1|A|C|944

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain R

Rqc2 homolog RqcH

Chain T

Transfer RNA; tRNA