IL_7AQD_074

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGCGAAG*CGAAGUAUA

Length

16 nucleotides

Bulged bases

7AQD|1|A|G|1830, 7AQD|1|A|A|1845, 7AQD|1|A|U|1849

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_074 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1098

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

7AQD|1|A|U|1827
7AQD|1|A|G|1828
7AQD|1|A|C|1829
7AQD|1|A|G|1830
7AQD|1|A|A|1831
7AQD|1|A|A|1832
7AQD|1|A|G|1833
*
7AQD|1|A|C|1842
7AQD|1|A|G|1843
7AQD|1|A|A|1844
7AQD|1|A|A|1845
7AQD|1|A|G|1846
7AQD|1|A|U|1847
7AQD|1|A|A|1848
7AQD|1|A|U|1849
7AQD|1|A|A|1850

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2