IL_7AQD_077

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAG*CC

Length

6 nucleotides

Bulged bases

7AQD|1|A|A|1876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_077 not in the Motif Atlas

Homologous match to IL_7RQB_073

Geometric discrepancy: 0.3373

The information below is about IL_7RQB_073

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_88739.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

7AQD|1|A|G|1875
7AQD|1|A|A|1876
7AQD|1|A|A|1877
7AQD|1|A|G|1878
*
7AQD|1|A|C|1922
7AQD|1|A|C|1923

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2