IL_7AQD_079

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_079 not in the Motif Atlas

Homologous match to IL_7RQB_075

Geometric discrepancy: 0.2286

The information below is about IL_7RQB_075

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

7AQD|1|A|A|1885
7AQD|1|A|G|1886
7AQD|1|A|G|1887
7AQD|1|A|A|1888
7AQD|1|A|G|1889
*
7AQD|1|A|C|1911
7AQD|1|A|G|1912
7AQD|1|A|A|1913
7AQD|1|A|A|1914
7AQD|1|A|U|1915

Current chains

Chain A

23S ribosomal RNA

Nearby chains