IL_7AQD_112

3D structure

PDB id

7AQD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial RQC complex (Translocating State)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAUAAG*UGAAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AQD_112 not in the Motif Atlas

Homologous match to IL_5J7L_350

Geometric discrepancy: 0.1541

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

7AQD|1|A|G|2766
7AQD|1|A|A|2767
7AQD|1|A|U|2768
7AQD|1|A|A|2769
7AQD|1|A|A|2770
7AQD|1|A|G|2771
*
7AQD|1|A|U|2791
7AQD|1|A|G|2792
7AQD|1|A|A|2793
7AQD|1|A|A|2794
7AQD|1|A|G|2795
7AQD|1|A|C|2796

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

50S ribosomal protein L6

Chain J

50S ribosomal protein L13

Chain f

50S ribosomal protein L36