3D structure

PDB id
7AS8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GUUG*CACC
Length
8 nucleotides
Bulged bases
7AS8|1|A|U|1107
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7AS8_043 not in the Motif Atlas
Homologous match to IL_6PRV_001
Geometric discrepancy: 0.2044
The information below is about IL_6PRV_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_92446.2
Basepair signature
cWW-cWW-R-L-L
Number of instances in this motif group
5

Unit IDs

7AS8|1|A|G|1105
7AS8|1|A|U|1106
7AS8|1|A|U|1107
7AS8|1|A|G|1108
*
7AS8|1|A|C|1122
7AS8|1|A|A|1123
7AS8|1|A|C|1124
7AS8|1|A|C|1125

Current chains

Chain A
23S rRNA

Nearby chains

Chain K
50S ribosomal protein L11
Chain Q
50S ribosomal protein L16

Coloring options:


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