IL_7AS8_080

3D structure

PDB id

7AS8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacillus subtilis ribosome quality control complex state B. Ribosomal 50S subunit with P-tRNA, RqcH, and RqcP/YabO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

7AS8|1|A|A|1967, 7AS8|1|A|U|1973, 7AS8|1|A|C|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7AS8_080 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1263

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

7AS8|1|A|C|1963
7AS8|1|A|G|1964
7AS8|1|A|A|1965
7AS8|1|A|A|1966
7AS8|1|A|A|1967
7AS8|1|A|U|1968
7AS8|1|A|U|1969
7AS8|1|A|C|1970
7AS8|1|A|C|1971
7AS8|1|A|U|1972
7AS8|1|A|U|1973
7AS8|1|A|G|1974
*
7AS8|1|A|C|1990
7AS8|1|A|C|1991
7AS8|1|A|C|1992
7AS8|1|A|G|1993

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L2