IL_7ASM_034

3D structure

PDB id

7ASM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

UCCCAAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASM_034 not in the Motif Atlas

Homologous match to IL_7A0S_034

Geometric discrepancy: 0.1202

The information below is about IL_7A0S_034

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7ASM|1|A|U|1048
7ASM|1|A|C|1049
7ASM|1|A|C|1050
7ASM|1|A|C|1051
7ASM|1|A|A|1052
7ASM|1|A|A|1053
7ASM|1|A|A|1054
7ASM|1|A|A|1055
*
7ASM|1|A|U|1194
7ASM|1|A|A|1195

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20