IL_7ASM_110
3D structure
- PDB id
- 7ASM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 50S after 30 minutes incubation at 37C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CGAUGGUAG*CUAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_7ASM_110 not in the Motif Atlas
- Homologous match to IL_7A0S_106
- Geometric discrepancy: 0.123
- The information below is about IL_7A0S_106
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
7ASM|1|B|C|69
7ASM|1|B|G|70
7ASM|1|B|A|71
7ASM|1|B|U|72
7ASM|1|B|G|73
7ASM|1|B|G|74
7ASM|1|B|U|75
7ASM|1|B|A|76
7ASM|1|B|G|77
*
7ASM|1|B|C|94
7ASM|1|B|U|95
7ASM|1|B|A|96
7ASM|1|B|G|97
7ASM|1|B|A|98
7ASM|1|B|G|99
7ASM|1|B|U|100
7ASM|1|B|A|101
7ASM|1|B|G|102
Current chains
- Chain B
- 5S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain K
- 50S ribosomal protein L16
- Chain T
- 50S ribosomal protein L25
- Chain U
- 50S ribosomal protein L27
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