IL_7ASN_031

3D structure

PDB id

7ASN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S after 30 minutes incubation a 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.73 Å

Loop

Sequence

UCCCAAAA*UA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASN_031 not in the Motif Atlas

Homologous match to IL_5J7L_278

Geometric discrepancy: 0.1851

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

7ASN|1|A|U|1048
7ASN|1|A|C|1049
7ASN|1|A|C|1050
7ASN|1|A|C|1051
7ASN|1|A|A|1052
7ASN|1|A|A|1053
7ASN|1|A|A|1054
7ASN|1|A|A|1055
*
7ASN|1|A|U|1194
7ASN|1|A|A|1195

Current chains

Chain A

23S

Nearby chains

Chain H

50S ribosomal protein L13

Chain O

50S ribosomal protein L20