IL_7ASO_025

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGAAG*CGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_025 not in the Motif Atlas

Homologous match to IL_6CZR_170

Geometric discrepancy: 0.3794

The information below is about IL_6CZR_170

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_77691.4

Basepair signature

cWW-tSH-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

7ASO|1|X|C|1442
7ASO|1|X|G|1443
7ASO|1|X|A|1444
7ASO|1|X|A|1445
7ASO|1|X|G|1446
*
7ASO|1|X|C|1478
7ASO|1|X|G|1479
7ASO|1|X|A|1480
7ASO|1|X|A|1481
7ASO|1|X|G|1482

Current chains

Chain X

16S

Nearby chains