IL_7ASO_039

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GCAC*GAGUGAAAUAGAAC

Length

18 nucleotides

Bulged bases

7ASO|1|Y|U|549, 7ASO|1|Y|A|553

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_039 not in the Motif Atlas

Geometric match to IL_4WF9_015

Geometric discrepancy: 0.1805

The information below is about IL_4WF9_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44923.1

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

9

Unit IDs

7ASO|1|Y|G|527
7ASO|1|Y|C|528
7ASO|1|Y|A|529
7ASO|1|Y|C|530
*
7ASO|1|Y|G|541
7ASO|1|Y|A|542
7ASO|1|Y|G|543
7ASO|1|Y|U|544
7ASO|1|Y|G|545
7ASO|1|Y|A|546
7ASO|1|Y|A|547
7ASO|1|Y|A|548
7ASO|1|Y|U|549
7ASO|1|Y|A|550
7ASO|1|Y|G|551
7ASO|1|Y|A|552
7ASO|1|Y|A|553
7ASO|1|Y|C|554

Current chains

Chain Y

23S

Nearby chains

Chain V

50S ribosomal protein L22

Chain Z

50S ribosomal protein L24