3D structure

PDB id
7ASO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S after 30 minutes incubation at 37C
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
GGAAAAG*CGAAAAUGUACCGGGGC
Length
24 nucleotides
Bulged bases
7ASO|1|Y|A|1070, 7ASO|1|Y|A|1171, 7ASO|1|Y|U|1174, 7ASO|1|Y|C|1178
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ASO_060 not in the Motif Atlas
Geometric match to IL_4WF9_040
Geometric discrepancy: 0.2125
The information below is about IL_4WF9_040
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_50715.3
Basepair signature
cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
Number of instances in this motif group
4

Unit IDs

7ASO|1|Y|G|1068
7ASO|1|Y|G|1069
7ASO|1|Y|A|1070
7ASO|1|Y|A|1071
7ASO|1|Y|A|1072
7ASO|1|Y|A|1073
7ASO|1|Y|G|1074
*
7ASO|1|Y|C|1168
7ASO|1|Y|G|1169
7ASO|1|Y|A|1170
7ASO|1|Y|A|1171
7ASO|1|Y|A|1172
7ASO|1|Y|A|1173
7ASO|1|Y|U|1174
7ASO|1|Y|G|1175
7ASO|1|Y|U|1176
7ASO|1|Y|A|1177
7ASO|1|Y|C|1178
7ASO|1|Y|C|1179
7ASO|1|Y|G|1180
7ASO|1|Y|G|1181
7ASO|1|Y|G|1182
7ASO|1|Y|G|1183
7ASO|1|Y|C|1184

Current chains

Chain Y
23S

Nearby chains

Chain M
50S ribosomal protein L13
Chain P
50S ribosomal protein L16
Chain e
50S ribosomal protein L3
Chain k
50S ribosomal protein L36

Coloring options:


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