IL_7ASO_065

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

7ASO|1|Y|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_065 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.1383

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

7ASO|1|Y|C|1246
7ASO|1|Y|G|1247
7ASO|1|Y|U|1248
7ASO|1|Y|U|1249
7ASO|1|Y|G|1250
7ASO|1|Y|A|1251
7ASO|1|Y|A|1252
7ASO|1|Y|G|1253
*
7ASO|1|Y|U|1272
7ASO|1|Y|G|1273
7ASO|1|Y|G|1274
7ASO|1|Y|A|1275
7ASO|1|Y|G|1276

Current chains

Chain Y

23S

Nearby chains

Chain S

50S ribosomal protein L20