IL_7ASO_070

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

UGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_070 not in the Motif Atlas

Homologous match to IL_4WF9_052

Geometric discrepancy: 0.2113

The information below is about IL_4WF9_052

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

7ASO|1|Y|U|1394
7ASO|1|Y|G|1395
7ASO|1|Y|A|1396
7ASO|1|Y|G|1397
7ASO|1|Y|G|1398
*
7ASO|1|Y|C|1407
7ASO|1|Y|G|1408
7ASO|1|Y|U|1409
7ASO|1|Y|A|1410
7ASO|1|Y|G|1411

Current chains

Chain Y

23S

Nearby chains

Chain c

50S ribosomal protein L28

Chain i

50S ribosomal protein L34