3D structure

PDB id
7ASO (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus 70S after 30 minutes incubation at 37C
Experimental method
ELECTRON MICROSCOPY
Resolution
3.11 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_7ASO_106 not in the Motif Atlas
Homologous match to IL_4WF9_099
Geometric discrepancy: 0.1201
The information below is about IL_4WF9_099
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.3
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

7ASO|1|Y|U|2663
7ASO|1|Y|U|2664
7ASO|1|Y|G|2665
7ASO|1|Y|A|2666
7ASO|1|Y|G|2667
*
7ASO|1|Y|C|2801
7ASO|1|Y|A|2802
7ASO|1|Y|A|2803
7ASO|1|Y|G|2804
7ASO|1|Y|A|2805
7ASO|1|Y|U|2806
7ASO|1|Y|G|2807
7ASO|1|Y|A|2808
7ASO|1|Y|G|2809

Current chains

Chain Y
23S

Nearby chains

Chain M
50S ribosomal protein L13
Chain e
50S ribosomal protein L3

Coloring options:


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