IL_7ASO_147

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

CCUG*CAAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_147 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.1455

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7ASO|1|Y|C|2111
7ASO|1|Y|C|2112
7ASO|1|Y|U|2113
7ASO|1|Y|G|2114
*
7ASO|1|Y|C|2259
7ASO|1|Y|A|2260
7ASO|1|Y|A|2261
7ASO|1|Y|G|2262

Current chains

Chain Y

23S

Nearby chains

Chain c

50S ribosomal protein L28