IL_7ASO_155

3D structure

PDB id

7ASO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 30 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.11 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

7ASO|1|X|A|540, 7ASO|1|X|U|542, 7ASO|1|X|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASO_155 not in the Motif Atlas

Homologous match to IL_6CZR_133

Geometric discrepancy: 0.5583

The information below is about IL_6CZR_133

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.3

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7ASO|1|X|G|523
7ASO|1|X|U|524
7ASO|1|X|G|525
7ASO|1|X|C|526
7ASO|1|X|C|527
7ASO|1|X|A|528
7ASO|1|X|G|529
*
7ASO|1|X|C|536
7ASO|1|X|G|537
7ASO|1|X|G|538
7ASO|1|X|U|539
7ASO|1|X|A|540
7ASO|1|X|A|541
7ASO|1|X|U|542
7ASO|1|X|A|543
7ASO|1|X|C|544

Current chains

Chain X

16S

Nearby chains

Chain 3

30S ribosomal protein S12

Chain B

30S ribosomal protein S3

Chain l

30S ribosomal protein S4