IL_7ASP_046

3D structure

PDB id

7ASP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S after 50 minutes incubation at 37C

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UUUG*UUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_7ASP_046 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2332

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

7ASP|1|Y|U|637
7ASP|1|Y|U|638
7ASP|1|Y|U|639
7ASP|1|Y|G|640
*
7ASP|1|Y|U|705
7ASP|1|Y|U|706
7ASP|1|Y|G|707
7ASP|1|Y|G|708

Current chains

Chain Y

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L35

Chain E

50S ribosomal protein L4

Chain J

50S ribosomal protein L15